Implications of Whole Genome Sequencing Findings to the Food Industry

Recent advances in next generation sequencing and bioinformatics tools have made whole genome sequencing a viable tool for foodborne bacterial pathogen surveillance. Whole genome sequencing is being investigated by the food industry as a new tool that can be used for source tracking potential pathogens in the manufacturing plant environment. This presentation will discuss possible applications of whole genome sequencing in the food industry as well as review the regulatory impact of whole genome sequencing on the industry. Two case studies from manufacturing facilities will be given to illustrate how whole genome sequencing played a role in pinpointing the source of potential pathogens in the food environment. These case studies will highlight how challenges in manufacturing environments have led to new opportunities to use whole genome sequencing as an investigational tool. Lastly, this session will discuss potential implications of whole genome sequencing on the food industry that risk managers should consider when using this technology.