Purpose: This study investigated the genetic structure of Vc populations in Florida relative to toxigenic 7th pandemic Vc.
Methods: Water, sediment, oyster, fish and various plant samples were collected seasonally from 2011 to 2012 at different sites in Tampa and Apalachicola Bays. Environmental parameters, including temperature, salinity, pH, and dissolved oxygen were recorded. Presumptive Vc was isolated from CHROMagar™ and TCBS, and confirmed by rRNA intergenic spacer region-based PCR. Confirmed isolates were compared to clinical Vc by multilocus sequence typing (MLST) of five housekeeping genes (recA, gyrB, pyrH, gapA, and topA) and screened for cholera toxin gene, ctxA, by PCR.
Results: Vc was isolated from only water samples in Apalachicola and from both water and oysters in Tampa Bay. Unlike other Vibrio species, Vc was not widely distributed throughout the bay, but was mostly associated with near-shore sites with lower salinity. Most strains from Apalachicola (92%) and Tampa (63%) closely associated with a genetic clade that included Vc O75 and classical Vc 395 but were distinct from the 7th pandemic Vc clade that included only one isolate from Apalachicola. Other strains formed unique clades. No environmental strain was positive for ctxA.
Significance: Vc is endemic to Florida waters but is divergent from the current 7th pandemic strain, and virulence potential appears limited due to the absence of genes for cholera toxin.