Purpose: To gain insight into O157:H7 population diversity and dynamics, we performed a survey of 20 herds across California’s Central Valley. This information is important for both molecular epidemiology and food-safety protocols, particularly regarding slaughter and harvest.
Methods: The survey of cattle was performed by obtaining isolates from individual fecal samples in 20 herds, around 40 samples per visit. Genome sequences were obtained using next-generation sequencing (Illumina MiSeq).
Results: A total of 39 herd visits were made, and 12 visits returned with samples positive for O157:H7. These 12 visits were from 9 of 20 herds visited and produced 85 O157:H7 isolates. E. coli O157:H7 isolates from herds with a high rate of isolation (>30%) had a single monophyletic lineage to which most isolates belonged. A follow-up survey from one of the farms that had a high isolation rate (87.5%), performed 11 months later, showed a highly reduced O157:H7 isolation rate (5.2%). The formerly highly prevalent lineage, however, was still present. Most of the isolates were genetically similar to clinical isolates from known O157:H7 outbreaks.
Significance: Cattle herds may go through temporary periods where O157:H7 is shed at a high prevalence throughout the population, meaning that these times, if avoided for slaughter or harvest in downstream fields, could lead to reduced risks of contamination with the pathogen. O157:H7 strains with the potential to cause severe disease are present in many herds in California’s Central Valley.